Package: prodlim 2024.06.24

prodlim: Product-Limit Estimation for Censored Event History Analysis

Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis. Kaplan-Meier and Aalen-Johansen method.

Authors:Thomas A. Gerds

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prodlim.pdf |prodlim.html✨
prodlim/json (API)

# Install 'prodlim' in R:
install.packages('prodlim', repos = c('https://tagteam.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/tagteam/prodlim/issues

On CRAN:

40 exports 7 stars 9.99 score 20 dependencies 415 dependents 27 mentions 1.0k scripts 102.3k downloads

Last updated 30 days agofrom:5f2292016f. Checks:OK: 8 NOTE: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 19 2024
R-4.5-win-x86_64OKAug 19 2024
R-4.5-linux-x86_64NOTEAug 19 2024
R-4.4-win-x86_64OKAug 19 2024
R-4.4-mac-x86_64OKAug 19 2024
R-4.4-mac-aarch64OKAug 19 2024
R-4.3-win-x86_64OKAug 19 2024
R-4.3-mac-x86_64OKAug 19 2024
R-4.3-mac-aarch64OKAug 19 2024

Exports:atRiskbackGroundcheckCausesconfIntcrModeldimColorEventHistory.framegetEventgetStatesHistjackknifejackknife.competing.risksjackknife.survivalleaveOneOutleaveOneOut.competing.risksleaveOneOut.survivalList2MatrixmarkTimemeanNeighborsmodel.designneighborhoodparseSpecialNamesPercentAxisplot.Histplot.prodlimplotCompetingRiskModelplotIllnessDeathModelpredictSurvIndividualprodlimquantile.prodlimredistrow.matchSimCompRiskSimSurvsindexSmartControlstopTimestrip.termssummary.prodlimsurvModel

Dependencies:clicodetoolsdata.tablediagramdigestfuturefuture.applyglobalsKernSmoothlatticelavalistenvMatrixnumDerivparallellyprogressrRcppshapeSQUAREMsurvival

Readme and manuals

Help Manual

Help pageTopics
Drawing numbers of subjects at-risk of experiencing an event below Kaplan-Meier and Aalen-Johansen plots.atRisk
Background and grid color control.backGround
Check availability of a cause in competing risk settingscheckCauses
Add point-wise confidence limits to the graphs of Kaplan-Meier and Aalen-Johansen estimates.confInt
Competing risks model for simulationcrModel
Dim a given color to a specified densitydimColor
Event history frameEventHistory.frame
Extract a column from an event history object.getEvent
States of a multi-state modelgetStates
Create an event history response variableHist
Compute jackknife pseudo values.jackknife jackknife.competing.risks jackknife.survival
Compute jackknife pseudo values.leaveOneOut leaveOneOut.competing.risks leaveOneOut.survival
Reduce list to a matrix or data.frame with names as new columnsList2Matrix
Marking product-limit plots at the censored times.markTime
Helper function to obtain running means for prodlim objects.meanNeighbors
Extract a design matrix and specials from a model.framemodel.design
Nearest neighborhoods for kernel smoothingneighborhood
Parse special termsparseSpecialNames
Percentage-labeled axis.PercentAxis
Box-arrow diagrams for multi-state models.plot.Hist
Plotting event probabilities over timelines.prodlim plot.prodlim
Plotting a competing-risk-model.plotCompetingRiskModel
Plotting an illness-death-model.plotIllnessDeathModel
Predicting event probabilities from product limit estimatespredict.prodlim predictAbsrisk predictCuminc predictSurv
Predict individual survival probabilitiespredictSurvIndividual
Print objects in the prodlim libraryprint.Hist print.neighborhood print.prodlim
product limit methodprodlim
Quantiles for Kaplan-Meier and Aalen-Johansen estimates.quantile.prodlim
Calculation of Efron's re-distribution to the right algorithm to obtain the Kaplan-Meier estimate.redist
Identifying rows in a matrix or data.framerow.match
Simulate competing risks dataSimCompRisk
Simulate survival dataSimSurv
Index for evaluation of step functions.sindex
Function to facilitate the control of arguments passed to subroutines.SmartControl
Stop the time of an event history objectstopTime
Strip special functions from termsstrip.terms
Summary of event historiessummary.Hist
Summary method for prodlim objects.summary.prodlim
Survival model for simulationsurvModel